Grisha // Portfolio

Where deep learning, biology and creativity intersect


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Publications

Caballero-Mancebo, S., Shinde, R., Bolger-Munro, M., Peruzzo, M., Szep, G., Steccari, I., Labrousse-Arias, D., Zheden, V., Merrin, J., & Callan-Jones, A. (2024). Friction forces determine cytoplasmic reorganization and shape changes of ascidian oocytes upon fertilization. Nature Physics.

Coppard, V., Szep, G., Georgieva, Z., Howlett, S., Jarvis, L., Rainbow, D., Suchanek, O., Needham, E., Mousa, H., & Menon, D. (2024). FlowAtlas. jl: an interactive tool bridging FlowJo with computational tools in Julia. Frontiers in Immunology.

Cornwall, L., Szep, G., Day, J., Krishnan, S., Carter, D., Blundell, J., Wollman, L., Dalchau, N., & Sim, A. (2023). Fine-tuned protein language models capture T cell receptor stochasticity. NeurIPS 2023 Generative AI and Biology (GenBio) Workshop.

Trioni, A., Peruzzo, M., Hassani Bijarbooneh, F., Szep, G., Redchenko, E., Zemlicka, M., & Fink, J. (2022). Geometric Superinductance Qubits: Controlling Phase Delocalization across a Single Josephson Junction. APS March Meeting Abstracts.

Szep, G. (2022). Inferring Bifurcations between Phenotypes. PhD Thesis.

Szep, G., Dalchau, N., & Csikász-Nagy, A. (2021). Parameter inference with bifurcation diagrams. Advances in Neural Information Processing Systems.

Peruzzo, M., Hassani, F., Szep, G., Trioni, A., Redchenko, E., Žemlička, M., & Fink, J. (2021). Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction. PRX Quantum.

Grant, P., Szep, G., Patange, O., Halatek, J., Coppard, V., Csikász-Nagy, A., Haseloff, J., Locke, J., Dalchau, N., & Phillips, A. (2020). Interpretation of morphogen gradients by a synthetic bistable circuit. Nature communications.

Dalchau, N., Szép, G., Hernansaiz-Ballesteros, R., Barnes, C., Cardelli, L., Phillips, A., & Csikász-Nagy, A. (2018). Computing with biological switches and clocks. Natural computing.

Mueller, J., Szep, G., Nemethova, M., De Vries, I., Lieber, A., Winkler, C., Kruse, K., Small, J., Schmeiser, C., & Keren, K. (2017). Load adaptation of lamellipodial actin networks. Cell.